Sustainable production of formic acid from CO2 by a novel immobilized mutant formate dehydrogenase

dc.contributor.author Tulek, Ahmet
dc.contributor.author Gunay, Elif
dc.contributor.author Servili, Burak
dc.contributor.author Essiz, Sebnem
dc.contributor.author Binay, Baris
dc.contributor.author Yildirim, Deniz
dc.contributor.other Core Program
dc.contributor.other Molecular Biology and Genetics
dc.contributor.other 05. Faculty of Engineering and Natural Sciences
dc.contributor.other 07. Core Program
dc.contributor.other 01. Kadir Has University
dc.date.accessioned 2023-10-19T15:11:40Z
dc.date.available 2023-10-19T15:11:40Z
dc.date.issued 2023
dc.description.abstract Formate dehydrogenase (NAD+-dependent FDH) is an enzyme that catalyzes the reversible oxidation of formate to CO2 while reducing NAD+ to NADH. The enzyme has been used in industrial and chemical applications for NADH regeneration for a long time. However, discovering the unique ability of FDHs, which is to reduce CO2 and produce formic acid, leads studies focusing on discovering or redesigning FDHs. Despite using various protein engineering techniques, these studies mostly target the same catalytic site amino acids of FDHs. Here, for the first time, the effect of an Asp188 mutation on a potential allosteric site in NAD+-dependent CtFDH around its subunit-subunit interface was studied by molecular modelling and simulation in the presence of bicarbonate and formate. Biochemical and kinetic characterization of this Asp188Arg mutant and wild type CtFDH enzymes were performed in detail. Both enzymes were also immobilized on newly synthesized MWCNT-Ni-O-Si/Ald and MWCNT-Ni-O-Si/Glu supports designed to overcome well-known CtFDH stability problems including thermostability and reuse resistance. Integrating mutation and immobilization provided about a 25-fold increase in catalytic efficiency for carbonate activity. The one-way ANOVA analysis also ensured significant effect of the mutation and immobilization on kinetic constants. After characterizing the immobilization of highly purified wild type and mutant enzyme with instrumental analysis techniques, the thermal stability of MWCNT-Ni-Si@wtCtFDH and MWCNT-Ni-Si@mt-CtFDH was found to increase about 11-and 18-fold, respectively, compared to their free counterparts at 50 degrees C. The mutant CtFDH and its immobilized counterpart produced around 2-fold more formic acid than those of wild type CtFDH and its immobilized counterpart under the same conditions. MWCNT-Ni-Si@wt-CtFDH and MWCNT-Ni-Si@mt-CtFDH remained around 82 % and 86 % of their initial activities respectively after lots of recycling. Integration of subunit interface amino acid position of NAD+ dependent FDHs engineering and immobilization provides a new insight can be scientifically and rationally employed for this current application FDHs as a solution to produce formic acids from renewable sources. en_US
dc.identifier.citationcount 12
dc.identifier.doi 10.1016/j.seppur.2022.123090 en_US
dc.identifier.issn 1383-5866
dc.identifier.issn 1873-3794
dc.identifier.scopus 2-s2.0-85145833343 en_US
dc.identifier.uri https://doi.org/10.1016/j.seppur.2022.123090
dc.identifier.uri https://hdl.handle.net/20.500.12469/5164
dc.khas 20231019-WoS en_US
dc.language.iso en en_US
dc.publisher Elsevier en_US
dc.relation.ispartof Separation and Purification Technology en_US
dc.rights info:eu-repo/semantics/closedAccess en_US
dc.subject Chaetomium-Thermophilum Formate En_Us
dc.subject Carbon Nanotubes En_Us
dc.subject Covalent Immobilization En_Us
dc.subject Conversion En_Us
dc.subject Reduction En_Us
dc.subject Dioxide En_Us
dc.subject Site En_Us
dc.subject Hydrogenation En_Us
dc.subject Bicarbonate En_Us
dc.subject Mechanism En_Us
dc.subject Chaetomium-Thermophilum Formate
dc.subject Carbon Nanotubes
dc.subject Covalent Immobilization
dc.subject Conversion
dc.subject Reduction
dc.subject Dioxide
dc.subject Formate dehydrogenase en_US
dc.subject Site
dc.subject Subunit-subunit interface en_US
dc.subject Hydrogenation
dc.subject Site-directed mutagenesis en_US
dc.subject Bicarbonate
dc.subject MWCNT-Ni en_US
dc.subject Mechanism
dc.subject Formic acid en_US
dc.title Sustainable production of formic acid from CO2 by a novel immobilized mutant formate dehydrogenase en_US
dc.type Article en_US
dspace.entity.type Publication
gdc.author.id Servili, Burak/0000-0001-8869-6302
gdc.author.id Tülek, Ahmet/0000-0003-1079-7837
gdc.author.id Yildirim, Deniz/0000-0002-5041-8160
gdc.author.id Tülek, Ahmet/0000-0003-1079-7837
gdc.author.id Essiz, Sebnem/0000-0002-5476-4722
gdc.author.institutional Eşsiz, Şebnem
gdc.author.institutional Servili, Burak
gdc.author.wosid Servili, Burak/ABF-2780-2021
gdc.author.wosid Tülek, Ahmet/ITV-5371-2023
gdc.author.wosid Yildirim, Deniz/C-2929-2018
gdc.author.wosid Tülek, Ahmet/S-8916-2018
gdc.bip.impulseclass C4
gdc.bip.influenceclass C5
gdc.bip.popularityclass C4
gdc.coar.access metadata only access
gdc.coar.type text::journal::journal article
gdc.description.departmenttemp [Tulek, Ahmet; Binay, Baris] Gebze Tech Univ, Fac Engn, Dept Bioengn, TR-41400 Kocaeli, Turkiye; [Gunay, Elif] Gebze Tech Univ, Inst Nat & Appl Sci, Dept Mol Biol & Genet, TR-41400 Kocaeli, Turkiye; [Servili, Burak; Essiz, Sebnem] Kadir Has Univ, Grad Sch Sci & Engn, Bioinformat & Genet Program, TR-34083 Istanbul, Turkiye; [Essiz, Sebnem] Kadir Has Univ, Dept Engn & Nat Sci, Mol Biol & Genet, TR-34083 Istanbul, Turkiye; [Binay, Baris] Bauzyme Biotechnol Co, Gebze Tech Univ Technopark Reg, TR-41400 Kocaeli, Turkiye; [Yildirim, Deniz] Cukurova Univ, Fac Ceyhan Engn, Dept Chem Engn, TR-01950 Adana, Turkiye en_US
gdc.description.publicationcategory Makale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanı en_US
gdc.description.scopusquality Q1
gdc.description.startpage 123090
gdc.description.volume 309 en_US
gdc.description.wosquality Q1
gdc.identifier.openalex W4313528923
gdc.identifier.wos WOS:000916222000001 en_US
gdc.oaire.diamondjournal false
gdc.oaire.impulse 32.0
gdc.oaire.influence 3.4012273E-9
gdc.oaire.isgreen false
gdc.oaire.keywords Site-directed mutagenesis
gdc.oaire.keywords MWCNT-Ni
gdc.oaire.keywords Dioxide
gdc.oaire.keywords Conversion
gdc.oaire.keywords Site
gdc.oaire.keywords Formic acid
gdc.oaire.keywords Chaetomium-Thermophilum Formate
gdc.oaire.keywords Bicarbonate
gdc.oaire.keywords Covalent Immobilization
gdc.oaire.keywords Formate dehydrogenase
gdc.oaire.keywords Carbon Nanotubes
gdc.oaire.keywords Subunit-subunit interface
gdc.oaire.keywords Hydrogenation
gdc.oaire.keywords Mechanism
gdc.oaire.keywords Reduction
gdc.oaire.popularity 2.1071932E-8
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gdc.oaire.sciencefields 02 engineering and technology
gdc.oaire.sciencefields 01 natural sciences
gdc.oaire.sciencefields 0104 chemical sciences
gdc.oaire.sciencefields 0210 nano-technology
gdc.openalex.fwci 5.246
gdc.openalex.normalizedpercentile 1.0
gdc.openalex.toppercent TOP 1%
gdc.opencitations.count 25
gdc.plumx.crossrefcites 11
gdc.plumx.mendeley 38
gdc.plumx.newscount 1
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gdc.scopus.citedcount 35
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