Mühendislik ve Doğa Bilimleri Fakültesi
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Article Citation - WoS: 5Citation - Scopus: 5Analysis of Mixed-Element Structures Formed With Shunt Capacitors Separated by Transmission Lines(IEEE-Inst Electrical Electronics Engineers Inc, 2019) Şengül, Metin Y.; Çakmak, GökhanIn this brief, the analysis of mixed-element structures formed with shunt capacitors separated by commensurate transmission lines is performed first time in the literature. First, a low-pass lumped-element ladder network is considered. Then the series inductors are replaced with commensurate transmission lines. As a result, a practically important mixed-element structure is obtained. Then the description of the structure by means of two frequency variables (one for shunt capacitors and one for transmission lines) is detailed: Explicit expressions for the coefficients of the descriptive two-variable polynomials in terms of the coefficients of the single variable boundary polynomials are derived for various numbers of elements, which are obtained first time in the literature. Finally, a mixed-element broadband matching network is designed to illustrate the usage of the obtained expressions. If it is preferred not to have shunt capacitors, they can be replaced with open-ended stubs via Richard's transformation. So the resultant circuit is extremely suitable for microstrip fabrication.Article Citation - WoS: 7Citation - Scopus: 12An Analysis of Price Spikes and Deviations in the Deregulated Turkish Power Market(Elsevier, 2019) Gayretli, Gizem; Yücekaya, Ahmet; Bilge, Ayşe HümeyraThe successful operation of a real time market is related to the planning in the day ahead market. We analyze the day ahead and real time market data for the Turkish power market for the period 2012-2015 to classify price spikes and their causes. We also focus on the levels of deviation between the day ahead market values and the real time market values. We define price deviation and load deviation ratios to measure the level of deviation both in price and demand. The analysis for the load is based on load shedding and cycling values. We analyze the mean and standard deviation in market prices and we determine the price spike as a two sigma deviation from the mean value. It is shown that 60% of the price deviation ratios are in the range of ( +/- 20%), while 44% are in the range of ( +/- 10%) and 35% are in the range of (+/- 5%). We also show that 56.9% of the spikes are due to problems in the generation of natural gas based power plants which affect the day ahead and real time prices. A total of 29.2% of the spikes are due to power plant and system failures that affect only real time prices. The share of high temperature based spikes is 13.9% which is a result of air conditioner usage.Article Analytic Solution of the Feldtkeller Equation(Elsevier GMBH Urban & Fischer Verlag, 2009) Şengül, Metin Y.In every reflectance-based application like broadband matching circuit modeling etc. a nonlinear equation following from energy conservation the Feldtkeller equation must be solved in order to obtain real networks. In the literature however there is no analytic solution available but only numerical solutions. Consequently the resulting error depends on the accuracy of the numerical tools. In this paper an analytic solution is proposed which is based on the modified ABCD-parameters of a lossless reciprocal two-port network. An algorithm is presented and examples are included to illustrate the implementation of the analytical method. (C) 2008 Elsevier GmbH. All rights reserved.Article Citation - WoS: 1Citation - Scopus: 3An Approach To Evaluate Cam Software Alternatives(TAYLOR & FRANCIS LTD, 2020) Ayağ, ZekiThe selection process for the best computer-aided manufacturing (CAM) software among a set of potential number of alternatives in market has been critical issue for most companies that aim to make their design/manufacturing-related activities automated. Because this selection process is very vital for companies because a wrong decision might put them into a difficult position in terms of economical, market share and time spent. Therefore, today's companies have used different multiple-criteria decision making (MCDM) methods for the evaluation study of CAM software alternatives to make this complex process easily applicable and not time-consuming. Among the MCDM methods in literature, the analytic hierarchy process (AHP) method has been widely used for various MCDM problems in both academic researches and industrial practices. However, in some cases, because of the vagueness and uncertainty on the judgments of decision maker(s), the crisp pair wise comparison in the conventional AHP seems to be insufficient and imprecise to capture the right judgments of decision maker(s). Therefore, a fuzzy logic method is integrated in the pair wise comparison of AHP to make up for this deficiency in the conventional AHP, called as fuzzy AHP. Moreover, the proposed approach is also realized on a case study.Article Citation - WoS: 4Citation - Scopus: 4An Assessment of Mining Efficiency in Turkish Lignite Industry(Elsevier Science, 2015) Ediger, Volkan S.; Berk, Istemi; Ersoy, MucellaThis article focuses on the mining activities of Turkish Coal Enterprises (TKI) the major lignite supplier in Turkey. First we analyzed the lignite production and overburden removal activities of TKI from a historical perspective and then employed the Principle Component Analysis to build a mining efficiency index of TKI and investigated its historical development since the establishment of the company. We found that labor productivity and operational structure have been the most important factors positively affecting the index. The current article makes two important contributions: (1) by using the most comprehensive data set available on TKI for the first time and (2) by developing a Mining Efficiency Index (MEI) which can be used to analyze productivity in lignite mining activities in different countries. (C) 2015 Elsevier Ltd. All rights reserved.Article Citation - WoS: 6Citation - Scopus: 7Assortment Optimization With Log-Linear Demand: Application at a Turkish Grocery Store(Elsevier, 2019) Hekimoğlu, Mustafa; Sevim, İsmail; Aksezer, Çağlar Sezgin; Durmuş, İpekIn retail sector product variety increases faster than shelf spaces of retail stores where goods are presented to consumers. Hence assortment planning is an important task for sustained financial success of a retailer in a competitive business environment. In this study we consider the assortment planning problem of a retailer in Turkey. Using empirical point-of-sale data a demand model is developed and utilized in the optimization model. Due to nonlinear nature of the model and integrality constraint we find that it is difficult to obtain a solution even for moderately large product sets. We propose a greedy heuristic approach that generates better results than the mixed integer nonlinear programming in a reasonably shorter period of time for medium and large problem sizes. We also proved that our method has a worst-case time complexity of O(n 2 )while other two well-known heuristics’ complexities are O(n 3 )and O(n 4 ). Also numerical experiments reveal that our method has a better performance than the worst-case as it generates better results in a much shorter run-times compared to other methods. © 2019 Elsevier LtdArticle Citation - WoS: 2Citation - Scopus: 2Babbling Through Social Media: a Cross-Country Study Mapping Out Social Networks Using Ewom Intentions(Springer, 2023) Zülal, İşler; Kıygı-Çallı, Meltem; El Oraiby, MaryamThis research aims to determine the factors affecting the users’ electronic word-of-mouth (eWOM) seeking and sharing intentions and to reveal the interactions among and within clusters using social network analysis (SNA). This study includes three hierarchical sub-studies conducted in two countries, Turkey and Poland. First, we develop a segmentation for social networking site (SNS) users based on the frequency of sharing product-related information on SNSs. Second, we investigate the impact of several factors that affect eWOM seeking and sharing intentions using regression analysis. In the second sub-study, we also include the identified segments developed in the first sub-study as another factor that may have differentiated eWOM intentions. Third, to understand the degree of interaction among SNS users, we apply an SNA using the forecasted eWOM intentions scores from the second sub-study, which gives us hypothetical social networks. The results of SNA present strong interactions inter- and intra-clusters in both countries. Some key findings include the identification of three SNS user segments, including “Middlers,” that may be of particular interest to brands. We also find that in terms of eWOM intentions, users in Turkey are more active than in Poland. Although some predictors of eWOM seeking and sharing intentions differ between the two countries, users intend to be more active in eWOM seeking than in eWOM sharing. The comparative study provides valuable insights for decision-makers to engage different market segments via SNSs with various proposed features using suggested information contents for selected product categories.Article Citation - WoS: 57Citation - Scopus: 65Beams: Backbone Extraction and Merge Strategy for the Global Many-To Alignment of Multiple Ppi Networks(Oxford University Press, 2014) Alkan, Ferhat; Erten, CesimMotivation: Global many-to-many alignment of biological networks has been a central problem in comparative biological network studies. Given a set of biological interaction networks the informal goal is to group together related nodes. For the case of protein-protein interaction networks such groups are expected to form clusters of functionally orthologous proteins. Construction of such clusters for networks from different species may prove useful in determining evolutionary relationships in predicting the functions of proteins with unknown functions and in verifying those with estimated functions. Results: A central informal objective in constructing clusters of orthologous proteins is to guarantee that each cluster is composed of members with high homological similarity usually determined via sequence similarities and that the interactions of the proteins involved in the same cluster are conserved across the input networks. We provide a formal definition of the global many-to-many alignment of multiple protein-protein interaction networks that captures this informal objective. We show the computational intractability of the suggested definition. We provide a heuristic method based on backbone extraction and merge strategy (BEAMS) for the problem. We finally show through experiments based on biological significance tests that the proposed BEAMS algorithm performs better than the state-of-the-art approaches. Furthermore the computational burden of the BEAMS algorithm in terms of execution speed and memory requirements is more reasonable than the competing algorithms.Review Citation - WoS: 12Citation - Scopus: 17Bidding of Price Taker Power Generators in the Deregulated Turkish Power Market(Pergamon-Elsevier Science Ltd, 2013) Yücekaya, Ahmet; Yücekaya, AhmetIn deregulated power markets power firms bid into the day-ahead power market either with buy offers or sell offers. The auction mechanism and competition determine the equilibrium price and quantity for each hour. If the bid price of a company is below the market clearing price then the offer of the company is accepted and rewarded with the market price. A company can be a price maker or price taker depending on the capacity it offers to the market. A price-taker unit must determine the right offer that will maximize their profit given price uncertainty and blind auction rules. This paper first examines power supply in the Turkish electricity market and bidding process. Then a marginal cost-based Monte Carlo method is developed to determine hourly and block bidding strategies of price taker units. Historical market prices are then implemented in a normal distribution to generate hourly price scenarios. A solution methodology is developed that maximizes the expected profit of each hourly and block bidding strategy over price scenarios. The generator is able to both evaluate the hourly bidding and block bidding strategies and find the best bidding strategy that will be submitted to the market using the proposed methodology. The model is illustrated for two coal units in Turkish power market and the results are presented. (C) 2013 Elsevier Ltd. All rights reserved.Article Citation - WoS: 26Citation - Scopus: 34Broadband Decoupling and Matching of a Superdirective Two-Port Antenna Array(IEEE-INST Electrical Electronics Engineers Inc, 2008) Volmer, Christian; Şengül, Metin Y.; Weber, Joern; Stephan, Ralf; Hein, Matthias A.Decoupling and matching networks may be used to improve the performance of compact antenna arrays where mutual radiator coupling has caused a degradation of the diversity capabilities. A popular network consists of a 180 degrees rat-race directional coupler which decouples the antenna ports followed by impedance matching networks at each port. Researchers however usually neglect the presence of losses both within the antenna array and the decoupling and matching network. For this reason we have built various narrowband and broadband matching networks and compare their performances with the help of calibrated far-field measurement data.Article Citation - WoS: 1Citation - Scopus: 4Broadband Impedance Matching Via Lossless Unsymmetrical Lattice Networks(Elsevier GMBH Urban & Fischer Verlag, 2012) Şengül, Metin Y.In this paper a broadband impedance matching network (equalizer) design algorithm has been proposed. In the equalizer a lossless unsymmetrical lattice network has been utilized. The branch impedances of the lattice network are considered as singly terminated lossless LC networks since it is not desired to dissipate power in the equalizer. After giving the algorithm its usage has been illustrated via an example. (C) 2011 Elsevier GmbH. All rights reserved.Article Citation - WoS: 15Citation - Scopus: 19Campways: Constrained Alignment Framework for the Comparative Analysis of a Pair of Metabolic Pathways(Oxford University Press, 2013) Abaka, Gamze; Biyikoglu, Turker; Erten, CesimMotivation: Given a pair of metabolic pathways an alignment of the pathways corresponds to a mapping between similar substructures of the pair. Successful alignments may provide useful applications in phylogenetic tree reconstruction drug design and overall may enhance our understanding of cellular metabolism. Results: We consider the problem of providing one-to-many alignments of reactions in a pair of metabolic pathways. We first provide a constrained alignment framework applicable to the problem. We show that the constrained alignment problem even in a primitive setting is computationally intractable which justifies efforts for designing efficient heuristics. We present our Constrained Alignment of Metabolic Pathways (CAMPways) algorithm designed for this purpose. Through extensive experiments involving a large pathway database we demonstrate that when compared with a state-of-the-art alternative the CAMPways algorithm provides better alignment results on metabolic networks as far as measures based on same-pathway inclusion and biochemical significance are concerned. The execution speed of our algorithm constitutes yet another important improvement over alternative algorithms.Article Canonical Forms for Families of Anti-Commuting Diagonalizable Linear Operators(Elsevier Science Inc, 2012) Kumbasar, Yalcin; Bilge, Ayşe HümeyraIt is well known that a commuting family of diagonalizable linear operators on a finite dimensional vector space is simultaneously diagonalizable. In this paper we consider a family A = {A(a)} A(a) : V -> V a = 1... N of anti-commuting (complex) linear operators on a finite dimensional vector space. We prove that if the family is diagonalizable over the complex numbers then V has an A-invariant direct sum decomposition into subspaces V(alpha) such that the restriction of the family A to V(alpha) is a representation of a Clifford algebra. Thus unlike the families of commuting diagonalizable operators diagonalizable anti-commuting families cannot be simultaneously digonalized but on each subspace they can be put simultaneously to (non-unique) canonical forms. The construction of canonical forms for complex representations is straightforward while for the real representations it follows from the results of [A.H. Bilge S. Kocak S. Uguz Canonical bases for real representations of Clifford algebras Linear Algebra Appl. 419 (2006) 417-439]. (C) 2011 Elsevier Inc. All rights reserved.Article Citation - WoS: 35Citation - Scopus: 41Channel Estimation for Residual Self-Interference in Full-Duplex Amplify-And Two-Way Relays(IEEE-INST Electrical Electronics Engineers Inc, 2017) Li, Xiaofeng; Tepedelenlioglu, Cihan; Şenol, HabibTraining schemes for full duplex two-way relays are investigated. We propose a novel one-block training scheme with a maximum likelihood estimator to estimate the channels between the nodes as well as the residual self-interference (RSI) channel simultaneously. A quasi-Newton algorithm is used to solve the estimator. As a baseline a multi-block training scheme is also considered. The Cramer-Rao bounds of the one-block and multi-block training schemes are derived. By using the Szego's theorem about Toeplitz matrices we analyze how the channel parameters and transmit powers affect the Fisher information. We show analytically that exploiting the structure arising from the RSI channel increases its Fisher information. Numerical results show the benefits of estimating the RSI channel.Article Citation - WoS: 13Citation - Scopus: 19Channel Estimation for Tds-Ofdm Systems in Rapidly Time-Varying Mobile Channels(IEEE-Inst Electrical Electronics Engineers Inc, 2018) Başaran, Mehmet; Şenol, Habib; Erküçük, Serhat; Çırpan, Hakan AliThis paper explores the performance of time-domain synchronous orthogonal frequency-division multiplexing (TDS-OFDM) systems operated under rapidly time-varying mobile channels. Since a rapidly time-varying channel contains more unknown channel coefficients than the number of observations, the mobile channel can conveniently be modeled with the discrete Legendre polynomial basis expansion model to reduce the number of unknowns. The linear minimum mean square error (LMMSE) estimate can be exploited for channel estimation on inter-block-interference-free received signal samples owing to transmitting pseudo-noise (PN) sequences. In conventional TDS-OFDM systems, the channel estimation performance is limited due to estimating channel responses only from the beginning part of the channel. Therefore, a new system model named "partitioned TDS-OFDM system" is proposed to improve the system performance by inserting multiple PN sequences to the middle and end parts of the channel as well. In addition to providing the reconstruction error performance, Bayesian Cramer-Rao lower hound is derived analytically. Also, the LMMSE-based symbol detection is employed. To alleviate the negative effects of inter-carrier-interference (ICI) occuring in mobile channels, ICI cancellation is applied to enhance the detection performance. The simulation results demonstrate that the proposed TDS-OFDM system is superior to the conventional system and its corresponding performance is able to approach the achievable lower performance bound.Article Citation - WoS: 33Citation - Scopus: 33Cis-Cyclopropylamines as Mechanism-Based Inhibitors of Monoamine Oxidases(Wiley-Blackwell, 2015) Malcomson, Thomas; Yelekçi, Kemal; Borrello, Maria Teresa; Ganesan, A.; Semina, Elena; De Kimpe, Norbert; Mangelinckx, Sven; Ramsay, Rona R.Cyclopropylamines inhibitors of monoamine oxidases (MAO) and lysine-specific demethylase (LSD1) provide a useful structural scaffold for the design of mechanism-based inhibitors for treatment of depression and cancer. For new compounds with the less common cis relationship and with an alkoxy substituent at the 2-position of the cyclopropyl ring the apparent affinity determined from docking experiments revealed little difference between the enantiomers. Using the racemate kinetic parameters for the reversible and irreversible inhibition of MAO were determined. No inhibition of LSD1 was observed. For reversible inhibition most compounds gave high IC50 values with MAO A but sub-micromolar values with MAO B. After pre-incubation of the cyclopropylamine with the enzyme the inhibition was irreversible for both MAOA and MAOB and the activity was not restored by dilution. Spectral changes during inactivation of MAOA included bleaching at 456nm and an increased absorbance at 400nm consistent with flavin modification. These derivatives are MAOB-selective irreversible inhibitors that do not show inhibition of LSD1. The best inhibitor was cis-N-benzyl-2-methoxycyclopropylamine with an IC50 of 5nm for MAOB and 170nm for MAOA after 30min pre-incubation. This cis-cyclopropylamine is over 20-fold more effective than tranylcypromine so may be studied as a lead for selective inhibitors of MAOB that do not inhibit LSD1.Article Citation - WoS: 5Citation - Scopus: 6Code Shift Keying Impulse Modulation for Uwb Communications(IEEE-INST Electrical Electronics Engineers Inc, 2008) Erküçük, Serhat; Kim, Dong In; Kwak, Kyung SupIn this paper the system performance of M-ary code shift keying (MCSK) impulse modulation is studied in detail and compared to M-ary pulse position modulation (MPPM) under single- and multi-user scenarios. For that bounds on the semi-analytic symbol-error rate (SER) expressions are derived and simulation studies are conducted. When practical implementations of MCSK and MPPM are considered it is shown that MCSK can provide about 2 dB performance gain over MPPM as it reduces the effects of multipath delays on the decision variables by randomizing locations of the transmit pulse.Article Citation - WoS: 5Citation - Scopus: 7Computational Analysis of a Zn-Bound Tris(imidazolyl) Calix[6]arene Aqua Complex: Toward Incorporating Second-Coordination Sphere Effects Into Carbonic Anhydrase Biomimetics(Amer Chemical Soc, 2013) Koziol, Lucas; Eşsiz, Şebnem; Wong, Sergio E.; Lau, Edmond Y.; Valdez, Carlos A.; Satcher, Joe H. Jr.; Aines, Roger D.; Lightstone, Felice C.Molecular dynamics simulations and quantum-mechanical calculations were performed to characterize a supra-molecular tris(imidazolyl) calix[6]arene Zn2+ aqua complex as a biomimetic model for the catalyzed hydration of carbon dioxide to bicarbonate H2O + CO2 -> H+ + HCO3-. On the basis of potential-of-mean-force (PMF) calculations stable conformations had distorted 3-fold symmetry and supported either one or zero encapsulated water molecules. The conformation with an encapsulated water molecule is calculated to be lower in free energy than the conformation with an empty cavity (Delta G = 1.2 kcal/mol) and is the calculated free-energy minimum in solution. CO2 molecule partitioning into the cavity is shown to be very facile proceeding with a barrier of 1.6 kcal/mol from a weak encounter complex which stabilizes the species by about 1.0 kcal/mol. The stabilization energy of CO2 is calculated to be larger than that of H2O (Delta Delta G = 1.4 kcal/mol) suggesting that the complex will preferentially encapsulate CO2 in solution. In contrast the PMF for a bicarbonate anion entering the cavity is calculated to be repulsive in all nonbonding regions of the cavity due to the diameter of the calix[6]arene walls. Geometry optimization of the Zn-bound hydroxide complex with an encapsulated CO2 molecule showed that multiple noncovalent interactions direct the reactants into optimal position for nucleophilic addition to occur. The calixarene complex is a structural mimic of the hydrophilic/hydrophobic divide in the enzyme providing a functional effect for CO2 addition in the catalytic cycle. The results show that Zn-binding calix[6]arene scaffolds can be potential synthetic biomimetics for CO2 hydration catalysis both in terms of preferentially encapsulating CO2 from solution and by spatially fixing the reactive species inside the cavity.Article Citation - WoS: 47Citation - Scopus: 60A Computerized Recognition System for the Home-Based Physiotherapy Exercises Using an Rgbd Camera(IEEE, 2014) Ar, İlktan; Akgül, Yusuf SinanComputerized recognition of the home based physiotherapy exercises has many benefits and it has attracted considerable interest among the computer vision community. However most methods in the literature view this task as a special case of motion recognition. In contrast we propose to employ the three main components of a physiotherapy exercise (the motion patterns the stance knowledge and the exercise object) as different recognition tasks and embed them separately into the recognition system. The low level information about each component is gathered using machine learning methods. Then we use a generative Bayesian network to recognize the exercise types by combining the information from these sources at an abstract level which takes the advantage of domain knowledge for a more robust system. Finally a novel postprocessing step is employed to estimate the exercise repetitions counts. The performance evaluation of the system is conducted with a new dataset which contains RGB (red green and blue) and depth videos of home-based exercise sessions for commonly applied shoulder and knee exercises. The proposed system works without any body-part segmentation bodypart tracking joint detection and temporal segmentation methods. In the end favorable exercise recognition rates and encouraging results on the estimation of repetition counts are obtained.Article Citation - WoS: 41Citation - Scopus: 43Computing Trade-Offs in Robust Design: Perspectives of the Mean Squared Error(Pergamon-Elsevier Science Ltd, 2011) Shin, Sangmun; Samanlıoğlu, Funda; Cho, Byung Rae; Wiecek, Margaret M.Researchers often identify robust design as one of the most effective engineering design methods for continuous quality improvement. When more than one quality characteristic is considered an important question is how to trade off robust design solutions. In this paper we consider a bi-objective robust design problem for which Pareto solutions of two quality characteristics need to be obtained. In practical robust design applications a second-order polynomial model is adequate to accommodate the curvature of process mean and variance functions thus mean-squared robust design models frequently used by many researchers would contain fourth-order terms. Consequently the associated Pareto frontier might be non-convex and supported and non-supported efficient solutions needs to be generated. So the objective of this paper is to develop a lexicographic weighted-Tchebycheff based bi-objective robust design model to generate the associated Pareto frontier. Our numerical example clearly shows the advantages of this model over frequently used weighted-sums model. (C) 2010 Elsevier Ltd. All rights reserved.
